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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5189021_5299372_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5189021 - 5299372
Intron Length:
110352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCACTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATCT
Flanking Amino Acid:
VDGRLLVSDRINGTANKMNG
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.8
69.5
36.5
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
54.8
0.23
1.8
75.13
42.3

Associated Gene:

Gene:
CELF2
Ensembl Gene ID:
ENSAPLG00000010064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030189
5188947 - 5428090
239144
ENSAPLT00000010552
5188947 - 5426764
237818
ENSAPLT00000031223
5188947 - 5428458
239512