About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51911628_51917316_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51911628 - 51917316
Intron Length:
5689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
GTACTTTCAACT
Flanking Amino Acid:
LQSRGPGSAAWFVGGELNIC
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
82.8
0.74
0.7
81.2
30
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
56.2
0.27
1.5
71.21
39.4

Associated Gene:

Gene:
ACSS3
Ensembl Gene ID:
ENSAPLG00000006860
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007120
51766938 - 51917762
150825