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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51924641_51927264_R

Intron Information:

Intron Rank:
132482
Intron Class:
major
Intron Phase:
Intron Coordinates:
51924641 - 51927264
Intron Length:
2624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
61.5
44.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
45.2
-0.5
2.6
58.1
46.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018547
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041740
51924622 - 51927468
2847