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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51934961_51935559_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51934961 - 51935559
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGGAC
5'SS Class:
major
3'SS Sequence:
CGTCTCTTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATGC
Flanking Amino Acid:
KVLTEPPPDEIIAVQVKEET
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
61.1
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.6
0.4
1
61.6
40
Minor 5ss
30.8
-2.2
3.6
37.2
41.7
Minor BPS
47.9
-0.1
2
62.52
43.4

Associated Gene:

Gene:
L3MBTL2
Ensembl Gene ID:
ENSAPLG00000003563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045333
51934198 - 51951379
17182
ENSAPLT00000040868
51934198 - 51951379
17182
ENSAPLT00000003683
51934198 - 51994187
59990