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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51937649_51939204_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51937649 - 51939204
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTACGCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTTACG
Flanking Amino Acid:
RPVPARLFNTDCPNHGFKAG
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
69
35.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.8
0.4
1
58.9
42
Minor 5ss
32.1
-2
3.3
47.2
42.3
Minor BPS
67.1
0.39
1.7
72.18
40.5

Associated Gene:

Gene:
L3MBTL2
Ensembl Gene ID:
ENSAPLG00000003563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045333
51934198 - 51951379
17182
ENSAPLT00000040868
51934198 - 51951379
17182
ENSAPLT00000003683
51934198 - 51994187
59990