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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51941913_51942534_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51941913 - 51942534
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GGTTTCTTAATT
Flanking Amino Acid:
RRVGHSMKKIEEKRSDMANH
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
75.5
34.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78.4
0.64
0.8
72.5
32
Minor 5ss
32.4
-2
3.9
48.7
47.8
Minor BPS
78.4
0.97
1.1
85.21
34.9

Associated Gene:

Gene:
L3MBTL2
Ensembl Gene ID:
ENSAPLG00000003563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045333
51934198 - 51951379
17182
ENSAPLT00000040868
51934198 - 51951379
17182
ENSAPLT00000003683
51934198 - 51994187
59990