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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51945456_51946310_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51945456 - 51946310
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
CTCGCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
CCCTCTCCCATT
Flanking Amino Acid:
KAAPVSCFKHVPLFDQWDDV
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
71.4
40.3
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
69.5
0.44
0.8
65.5
30.4
Minor 5ss
32.8
-2
2.9
42
37.6
Minor BPS
39.6
-0.7
2.1
51.58
44

Associated Gene:

Gene:
L3MBTL2
Ensembl Gene ID:
ENSAPLG00000003563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045333
51934198 - 51951379
17182
ENSAPLT00000040868
51934198 - 51951379
17182
ENSAPLT00000003683
51934198 - 51994187
59990