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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51946391_51946759_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51946391 - 51946759
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
ACCTCCTCACCT
Flanking Amino Acid:
LADGTLTGQDALVLGFDWGK
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71
0.47
0.9
65
36.4
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
54.2
0.21
1.9
70.25
46.6

Associated Gene:

Gene:
L3MBTL2
Ensembl Gene ID:
ENSAPLG00000003563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045333
51934198 - 51951379
17182
ENSAPLT00000040868
51934198 - 51951379
17182
ENSAPLT00000003683
51934198 - 51994187
59990