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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51949497_51950727_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
51949497 - 51950727
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.1
37
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.1
0.77
0.8
80.8
29.7
Minor 5ss
35
-1.7
2.9
38.6
40
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
L3MBTL2
Ensembl Gene ID:
ENSAPLG00000003563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003683
51934198 - 51994187
59990
ENSAPLT00000045333
51934198 - 51951379
17182
ENSAPLT00000040868
51934198 - 51951379
17182