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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51967282_51968575_R

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51967282 - 51968575
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
GTTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCACTGATAACT
Flanking Amino Acid:
ETRWHCTVCEDYDLCITCYN
Intron Amino Acid Position:
1612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.4
0.73
0.9
73.4
41.9
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
46.1
-0.2
2.2
66.76
43.7

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232