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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51972386_51974245_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
51972386 - 51974245
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTAACGATGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TTTTGTCTAACG
Flanking Amino Acid:
IGYLEYVKKLGYTTGHIWAC
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
52
0.04
1.1
43.8
41.9
Minor 5ss
43.4
-0.7
3.2
57.4
46.8
Minor BPS
56.3
0.06
2.1
71.75
41.4

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232