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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51976858_51977884_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51976858 - 51977884
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAAT
5'SS Class:
major
3'SS Sequence:
ATTTTTGCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTACCATATTT
Flanking Amino Acid:
VLHNEIIWPSGFVCDGCLKK
Intron Amino Acid Position:
1193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.7
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.1
0.77
0.8
81.8
35.3
Minor 5ss
28
-2.5
3.1
31.2
42.7
Minor BPS
58
0.33
1.9
81.9
39.5

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232