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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51977963_51979404_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51977963 - 51979404
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCTTTCTACA
Flanking Amino Acid:
KRKNDTLDPELFVECIECGR
Intron Amino Acid Position:
1167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
49.7
-0
1.8
68.48
37.5

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232