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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51985264_51986531_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51985264 - 51986531
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTATTTTGATA
Flanking Amino Acid:
PVDPQLLGIPDYFDIVKNPM
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
54.9
0.15
1.2
60.94
32.5

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232