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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51986651_51987221_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51986651 - 51987221
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TGTTTTTCAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTCAAAA
Flanking Amino Acid:
SPAAGQSKKKIFKPEELRQA
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
60.8
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.6
0.44
1.1
72.4
36.9
Minor 5ss
37.4
-1.4
3.4
46.8
43.2
Minor BPS
57.6
0.23
1.6
69.3
36.7

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232