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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51987379_51987927_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51987379 - 51987927
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTAATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTAATCTAATT
Flanking Amino Acid:
TELQMEEKSEVKVEPVVEEC
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
81.1
26.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.1
0.63
0.9
74.1
39.7
Minor 5ss
41
-1
2.9
52.8
38.5
Minor BPS
49.4
0.03
1.8
71.39
39.4

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232