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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51989057_51990107_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51989057 - 51990107
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
TGTTCTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
AAGTCGTTACAA
Flanking Amino Acid:
QPGNQTPVSQAQMTSSSCPV
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.5
39.9
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
74.8
0.56
0.8
69.7
31.2
Minor 5ss
49.2
-0
2.8
64.9
40.8
Minor BPS
44.9
-0.3
2.3
56.07
42.8

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232