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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51991676_51993719_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51991676 - 51993719
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATAATCTTATTC
Flanking Amino Acid:
MGQPQPGMSANGPLPDPTLI
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
53.6
0.09
1.6
61.99
37.4

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232