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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51994188_51994490_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51994188 - 51994490
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
GACAACCTAATA
Flanking Amino Acid:
QDLRNHLVHKLVQAIFPTPD
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
90.6
0.91
0.6
89
20.1
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
45.5
-0.3
1.8
52.22
39.1

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232