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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_51995452_51997955_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51995452 - 51997955
Intron Length:
2504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTTTATACTT
Flanking Amino Acid:
PQGLRPMNPISANPMGVNGG
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
80.8
0.69
0.9
73.7
41.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
49.8
0.06
1.8
72.64
38.9

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232