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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52000191_52002534_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52000191 - 52002534
Intron Length:
2344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ATAGATTTATTT
Flanking Amino Acid:
PVPGAGMPNMGQQQAPQVQQ
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
75.1
0.56
0.8
65.7
36
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
47.3
-0.1
1.8
63.75
41.1

Associated Gene:

Gene:
EP300
Ensembl Gene ID:
ENSAPLG00000010504
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010961
51965047 - 52011278
46232