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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52053884_52055202_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52053884 - 52055202
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTGTTCTGAAAT
Flanking Amino Acid:
ECTVAWGVCNHAFHFHCISR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.3
34
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
31
-2.2
3.6
41.8
45.3
Minor BPS
60.4
0.4
1.6
74.82
41.4

Associated Gene:

Gene:
RBX1
Ensembl Gene ID:
ENSAPLG00000010445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010865
52052926 - 52062755
9830