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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52061273_52062677_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52061273 - 52062677
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
CCCCCCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTTCTTTTGCT
Flanking Amino Acid:
AGKKRFEVKKWNAVALWAWD
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
60.3
38.8
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
69.9
0.45
0.7
61.2
29.2
Minor 5ss
28.3
-2.5
3.2
34.6
34.9
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
RBX1
Ensembl Gene ID:
ENSAPLG00000010445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010865
52052926 - 52062755
9830