Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52089543_52091804_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52089543 - 52091804

Intron Length:

2262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAGAA

5'SS Class:

major

3'SS Sequence:

TTTTGTATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTGTTTTGTATT

Flanking Amino Acid:

EFRHLVAKLKGESSMVWYDL

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

71.3

34.5

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

86.1

0.81

0.8

78.1

40.1

Minor 5ss

35.3

-1.7

3.4

46.9

48.4

Minor BPS

49.7

0.06

1.7

71.5

40.5

Associated Gene:

Gene:

XPNPEP3

Ensembl Gene ID:

ENSAPLG00000010243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038792

52077971 - 52096515

18545

ENSAPLT00000010689

52077971 - 52096316

18346