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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52094749_52096267_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52094749 - 52096267
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGACA
Flanking Amino Acid:
AAVRGWRGSPVCKSCALRRF
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
60.8
44.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.6
0.78
0.7
77.9
31
Minor 5ss
25.2
-2.8
3
30.3
42.8
Minor BPS
68.6
0.58
1.6
80.98
33.7

Associated Gene:

Gene:
XPNPEP3
Ensembl Gene ID:
ENSAPLG00000010243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038792
52077971 - 52096515
18545