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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52095945_52096267_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52095945 - 52096267
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGGG
5'SS Class:
major
3'SS Sequence:
TCCCTGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTGTCATTAAAA
Flanking Amino Acid:
AAVRGWRGSPAPDCYSRQSS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
60.8
44.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
75.5
0.57
0.8
68.9
31.6
Minor 5ss
25.2
-2.8
3
30.3
42.8
Minor BPS
61
0.34
1.8
69.87
42.1

Associated Gene:

Gene:
XPNPEP3
Ensembl Gene ID:
ENSAPLG00000010243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010689
52077971 - 52096316
18346