About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52096911_52100167_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52096911 - 52100167
Intron Length:
3257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGGA
5'SS Class:
major
3'SS Sequence:
TTTTGTTGAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTTTGTTGAAAA
Flanking Amino Acid:
ELAFLREWLESMGGTIPPAP
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.3
40.6
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
64.7
0.33
1.2
68
41.6
Minor 5ss
22.1
-3.2
3.4
29
43.5
Minor BPS
55.1
0.16
2
73.41
38.3

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775