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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52100226_52101507_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52100226 - 52101507
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
GTGCGCTTACAA
Flanking Amino Acid:
ASTSTDETSKGKAEEQPEEP
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
80.8
28.9
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
88.1
0.86
0.7
85.6
28.2
Minor 5ss
33
-1.9
3.4
45.9
49.3
Minor BPS
44.7
-0.4
2.1
54.78
43.6

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775