About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52101578_52101672_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52101578 - 52101672
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGGAAA
5'SS Class:
major
3'SS Sequence:
GCTTTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
GGAGTCTGAAGT
Flanking Amino Acid:
PEPESEESDLEIDNEGVIEP
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
72.7
33.3
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
77.8
0.63
0.8
69.5
36.8
Minor 5ss
32.2
-2
3
38.5
46.8
Minor BPS
46.2
-0.2
1.8
58.89
43.8

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775