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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52101744_52102326_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52101744 - 52102326
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTTTGCTTATTT
Flanking Amino Acid:
PQEMGDENVEVTEEMMDQAN
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
81.2
0.7
0.7
80.6
31.2
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
59.8
0.39
2
80.47
41.8

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775