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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52102964_52106324_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52102964 - 52106324
Intron Length:
3361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGCATTTTAACA
Flanking Amino Acid:
CLAILYAKRASVFVKLQKPN
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.1
0.74
0.8
77.4
31.4
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
58.9
0.28
1.3
60.95
39.1

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775