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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52106436_52107779_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52106436 - 52107779
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAATT
Flanking Amino Acid:
QTYKWRGKAHRLLGHWEEAA
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.4
0.59
0.9
66.8
43
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
71.5
0.75
1.4
84.15
37

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775