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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52107883_52109804_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52107883 - 52109804
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTATTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTGTAACA
Flanking Amino Acid:
SAMLKEVQPRAQKIAEHRRK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.8
44.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.4
0.62
1
73.4
40.7
Minor 5ss
33.4
-1.9
3.2
36.7
41.6
Minor BPS
57.8
0.24
2
75.15
36.6

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775