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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52110668_52111699_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52110668 - 52111699
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATGC
Flanking Amino Acid:
QFGGFPGGFPGGFPGAMPGG
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
49.9
-0
2.1
69.92
41.8

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775