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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52111801_52115050_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52111801 - 52115050
Intron Length:
3250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATGCCCTAATT
Flanking Amino Acid:
SDPEVLAAMQDPEVMVAFQD
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.4
0.68
0.9
74
36.8
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
60.2
0.4
1.8
76.47
40.1

Associated Gene:

Gene:
ST13
Ensembl Gene ID:
ENSAPLG00000009644
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010065
52096801 - 52118575
21775