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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52130371_52131412_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52130371 - 52131412
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TAATCTAAAAAT
Flanking Amino Acid:
PLDTARLRLQVDEKRKSKTT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
47.6
-0.1
2
68.44
41.9

Associated Gene:

Gene:
SLC25A17
Ensembl Gene ID:
ENSAPLG00000009624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010028
52127139 - 52145202
18064