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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52131480_52134480_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52131480 - 52134480
Intron Length:
3001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
VLLEIIKEEGLLAPYRGWFP
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
72.6
38.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
82.1
0.72
0.8
82.4
28
Minor 5ss
34.6
-1.8
2.9
48.3
41.7
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
SLC25A17
Ensembl Gene ID:
ENSAPLG00000009624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010028
52127139 - 52145202
18064