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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52134633_52138193_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52134633 - 52138193
Intron Length:
3561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
GTGTTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTGCTGATTT
Flanking Amino Acid:
GKDLVLGVVAGVANVLLTTP
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
64.4
0.32
1
63.7
42.8
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
49
0
2.1
72.32
45

Associated Gene:

Gene:
SLC25A17
Ensembl Gene ID:
ENSAPLG00000009624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010028
52127139 - 52145202
18064