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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52138311_52139008_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52138311 - 52139008
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
GTACTCAAAACT
Flanking Amino Acid:
IVPTNYKGIIDAFHQIIRDE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
88.9
0.87
0.6
88
21.8
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
47.9
-0
1.9
68
42.2

Associated Gene:

Gene:
SLC25A17
Ensembl Gene ID:
ENSAPLG00000009624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010028
52127139 - 52145202
18064