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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52140426_52144522_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52140426 - 52144522
Intron Length:
4097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
AATAGTATAACA
Flanking Amino Acid:
PLQTVQSILRFGRHRLNPEN
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
53
0.08
1
61.4
34.3
Major PPT
87.1
0.83
0.7
79.6
32.4
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
47.2
-0.2
2
60.79
38.8

Associated Gene:

Gene:
SLC25A17
Ensembl Gene ID:
ENSAPLG00000009624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010028
52127139 - 52145202
18064