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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52144606_52145054_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52144606 - 52145054
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAT
Flanking Amino Acid:
NVFYLLRERVRRFGLMGLYK
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
73.6
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
SLC25A17
Ensembl Gene ID:
ENSAPLG00000009624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010028
52127139 - 52145202
18064