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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52173165_52183313_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52173165 - 52183313
Intron Length:
10149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
LGLSVGAVSKVAITKAKVDF
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.8
0.67
0.8
74.4
35.8
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021623
52173078 - 52256614
83537
ENSAPLT00000015060
52173078 - 52255614
82537
ENSAPLT00000021713
52173078 - 52255614
82537