About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52230120_52244151_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52230120 - 52244151
Intron Length:
14032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTCTCAACA
Flanking Amino Acid:
EELVSQGIMPPLKSPAAFHE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
72.2
39.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
84.9
0.79
0.8
81.9
28.6
Minor 5ss
35.8
-1.6
2.8
41.3
38.3
Minor BPS
78.1
0.88
1.4
87.43
30.3

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015060
52173078 - 52255614
82537
ENSAPLT00000048237
52211943 - 52256614
44672
ENSAPLT00000021713
52173078 - 52255614
82537
ENSAPLT00000021623
52173078 - 52256614
83537