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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52244208_52245693_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52244208 - 52245693
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCAACTAAAACT
Flanking Amino Acid:
EQRRSLERARTEDYLKRKIR
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
47.4
-0.1
1.9
66.24
44.3

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015060
52173078 - 52255614
82537
ENSAPLT00000048237
52211943 - 52256614
44672
ENSAPLT00000021713
52173078 - 52255614
82537
ENSAPLT00000021623
52173078 - 52256614
83537