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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52245770_52246450_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52245770 - 52246450
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCCCCTGAACA
Flanking Amino Acid:
SELVRMHILEETSAEPSLQA
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69
0.43
1
65.2
34.9
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
71.1
0.66
1.4
78.11
38.1

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048237
52211943 - 52256614
44672
ENSAPLT00000021713
52173078 - 52255614
82537
ENSAPLT00000021623
52173078 - 52256614
83537
ENSAPLT00000015060
52173078 - 52255614
82537