Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52248824_52249342_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52248824 - 52249342

Intron Length:

519

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCGAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CCATTCTTATCT

Flanking Amino Acid:

AAKPPPTLIKQSQPKSTSEK

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

79.7

36.4

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

65.4

0.35

0.9

62.3

33.4

Minor 5ss

41.6

-0.9

3.6

64.2

47.3

Minor BPS

60.8

0.42

1.7

71.82

45.3

Associated Gene:

Gene:

MRTFA

Ensembl Gene ID:

ENSAPLG00000014434

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048237

52211943 - 52256614

44672

ENSAPLT00000021713

52173078 - 52255614

82537

ENSAPLT00000021623

52173078 - 52256614

83537

ENSAPLT00000015060

52173078 - 52255614

82537