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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52249597_52249894_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52249597 - 52249894
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGGGTC
5'SS Class:
major
3'SS Sequence:
TCTTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTCTTTCACT
Flanking Amino Acid:
NYQTILPAPPKPPGEQQSGA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
66.7
37.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.8
78.3
28.9
Minor 5ss
41.6
-0.9
3.6
58.1
41.4
Minor BPS
71.7
0.77
1.7
87.23
39

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021623
52173078 - 52256614
83537
ENSAPLT00000015060
52173078 - 52255614
82537
ENSAPLT00000048237
52211943 - 52256614
44672
ENSAPLT00000021713
52173078 - 52255614
82537