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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52250067_52250293_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52250067 - 52250293
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCTGTCTTAATG
Flanking Amino Acid:
PLPANLDEMKVAELKQELKL
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.3
0.48
0.8
69.8
29.5
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
60.5
0.19
1.5
58.97
43.6

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015060
52173078 - 52255614
82537
ENSAPLT00000048237
52211943 - 52256614
44672
ENSAPLT00000021713
52173078 - 52255614
82537
ENSAPLT00000021623
52173078 - 52256614
83537