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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52254496_52254714_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52254496 - 52254714
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
GGGAGCTAACCC
Flanking Amino Acid:
EAMKQQPKAQEKGCSSQQMD
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
80.2
0.68
0.7
72.7
32.1
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
39.1
-0.8
2.1
44.17
43.5

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021713
52173078 - 52255614
82537
ENSAPLT00000021623
52173078 - 52256614
83537
ENSAPLT00000015060
52173078 - 52255614
82537
ENSAPLT00000048237
52211943 - 52256614
44672