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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52254776_52255114_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52254776 - 52255114
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCCGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTCTCCTCACCC
Flanking Amino Acid:
DLFDILIESGEISADFKEQS
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
63.8
0.31
0.9
56.7
33.5
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
61.8
0.35
1.9
74.59
42.4

Associated Gene:

Gene:
MRTFA
Ensembl Gene ID:
ENSAPLG00000014434
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048237
52211943 - 52256614
44672
ENSAPLT00000021713
52173078 - 52255614
82537
ENSAPLT00000021623
52173078 - 52256614
83537
ENSAPLT00000015060
52173078 - 52255614
82537